Publications

Mining brain-wide gene expression data to identify imaging genomic modules via biclustering (Abstract)

Published in Organization for Human Brain Mapping, 2021

Mining brain-wide gene expression data to identify imaging genomic modules via biclustering.

Citation: Jingxuan Bao, Mansu Kim, Xiaohui Yao, Trang Le, Patryk Orzechowski, Jingwen Yan, Andrew Saykin, Jason Moore, Li Shen. (2021). "Mining brain-wide gene expression data to identify imaging genomic modules via biclustering." Organization for Human Brain Mapping 2021.

A Structural Enriched Functional Network: An Application to Predict Brain Cognitive Performance

Published in Medical Image Analysis, 2020

This paper proposed a method to accurately estimate the brain functional network enriched by the structural network from diffusion magnetic resonance imaging.

Citation: Mansu Kim, Jingxaun Bao, Kefei Liu, Bo-yong Park, Hyunjin Park, Jae Young Baik, Li Shen. (2020). "A Structural Enriched Functional Network: An Application to Predict Brain Cognitive Performance." Medical Image Analysis.

Estimating Hard-tissue Conditions from Dental Images via Machine Learning

Published in The 20th International Conference on BioInformatics and BioEngineering (ieeeBIBE2020), 2020

We applied four categories of machine learning strategies including nine different methods with two different feature representations to estimate the probability and severity of dental hard-tissue conditions from photographic tooth images.

Citation: Jingxuan Bao, Mansu Kim, Qing Sun, Anderson T. Hara, Gerardo Maupome, Li Shen. (2020). "Estimating Hard-tissue Conditions from Dental Images via Machine Learning." 20th International Conference on BioInformatics and BioEngineering (ieeeBIBE).

Structural Connectivity Enriched Functional Brain network using Simplex Regression with GraphNet

Published in MICCAI-MLMI, 2020

We proposed a simplex regression model with graph-constrained Elastic Net (GraphNet) to estimate functional networks enriched by structural connectivity in a biologically meaningful way with a low model complexity.

Citation: Mansu Kim, Jingxaun Bao, Kefei Liu, Bo-yong Park, Hyunjin Park, Li Shen. (2020). "Structural Connectivity Enriched Functional Brain network using Simplex Regression with GraphNet." International Conference on Medical Image Computing & Computer Assisted Intervention - Machine Learning in Medical Imaging Workshop.

Estimate the Proportion of Non-Specific Binding in MeRIP-Seq Data

Published in The Third International Conference on Biological Information and Biomedical Engineering, 2019

We estimate the absolute proportion of m6A specific binding mRNA in the N6-methyladenosine (IP sample) with the application of ISOpureR method.

Citation: Jingxuan Bao, Zhen Wei, Jia Meng, Jionglong Su. (2019). "Estimate the Proportion of Non-Specific Binding in MeRIP-Seq Data." The Third International Conference on Biological Information and Biomedical Engineering.

Optimal Scheduling for CK Advertisements on TV Programs

Published in Proceedings of the National Conference On Undergraduate Research (NCUR) 2017, 2017

We applied two ways, impression based approach and demographic approach, in evaluation of the advertisements orders for a specific company with modified data provided by Clypd.

Citation: Sharee N. Brewer, Tykeena Watson, Jingxuan Bao. (2017). "Optimal Scheduling for CK Advertisements on TV Programs." Proceedings of the National Conference On Undergraduate Research (NCUR) 2017.